PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042895_P01
Common NameLOC100284818, ZEAMMB73_501352
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 258aa    MW: 28188.8 Da    PI: 4.6249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042895_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-1376120655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  GRMZM2G042895_P01  76 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 120
                        579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.11370119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1673130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-1574124No hitNo description
PfamPF000107.9E-1175120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1576125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1576130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEMGDSFEYY WEMQQYLESE ELSLYMGTQD DALSCYDSSS PDGSISNSSW APAGVAATAS  60
EKREGPGGAA AANKNILMER DRRRKLNEKL YALRSVVPNI TKMDKASIIK DAIEYIEQLQ  120
AEERRALQAL EAGEGARCGG HGHGEEARVV LQQPAAAPAP VEVLELRVSE VGDRVLVVNV  180
TCSKGRDAMA RVCRAVEELR LRVITASVTS VAGCLMHTIF VEVDSDQTNR IQIKHMIEAA  240
LAQLDDASAS PPSVMSYY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.975000.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042895
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042895_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279670.0KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151185.20.0DNA binding like
TrEMBLK7UFH50.0K7UFH5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G042895_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.28e-30bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]