PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G044752_P05
Common NameLOC100285975
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 145aa    MW: 16259.7 Da    PI: 10.5331
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G044752_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1976129255
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa++
  GRMZM2G044752_P05  76 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARY 129
                        788899**********************************************96 PP
2HD-ZIP_I/II85.29e-2876129154
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                        +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRAR+
  GRMZM2G044752_P05  76 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARY 129
                        69***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-1962126IPR009057Homeodomain-like
SuperFamilySSF466892.74E-1867129IPR009057Homeodomain-like
PROSITE profilePS5007117.31372132IPR001356Homeobox domain
SMARTSM003894.9E-1874136IPR001356Homeobox domain
PfamPF000466.2E-1776129IPR001356Homeobox domain
CDDcd000861.95E-1676132No hitNo description
PRINTSPR000312.0E-6103112IPR000047Helix-turn-helix motif
PRINTSPR000312.0E-6112128IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MMERVEDLGL SLSLSSSLAS PRTHHVATML LRAPEKRFLE MPLLLPAKRT TEVTGEDGLR  60
GGSDEEDGGC GIDGSRKKLR LSKDQSAVLE DSFREHPTLN PRQKAALAQQ LGLRPRQVEV  120
WFQNRRARYV RSAHAICRRA LARVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480SRKKLRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.213390.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G044752
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G044752_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0859940.0BT085994.1 Zea mays full-length cDNA clone ZM_BFc0096D21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152336.14e-79uncharacterized protein LOC100285975
SwissprotQ01I238e-52HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
SwissprotQ0JB921e-51HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLC4J5971e-101C4J597_MAIZE; Uncharacterized protein
STRINGGRMZM2G044752_P012e-78(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-30homeobox protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]