PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G046968_P02
Common NameLOC100281765
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 404aa    MW: 43814 Da    PI: 5.7945
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G046968_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06356379326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        t++C +f     C+ G++C+F H+
  GRMZM2G046968_P02 356 TKPCAYFNSARGCRNGANCTFLHD 379
                        899********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.657353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5355382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-6356381IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-5356379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MHAAGPSSDD SLPPGFESLQ PTSDLKIDMS QIALIRWRCP PQILYNPDWC VAAGEESEEV  60
ALQNERMFGA LEAIYPRPSN IPPNPLVTPD VKDSQYDDSR TQLVPLLPVE EDDASDQFEE  120
PPVGLPSSYH QSDKYDDAIS RVPQASDALF TTAQQQPNGS INTTRSGVPA EADVVAAASA  180
AYTAIMQSNQ MGNMIDQDLL IKILSDPAQI QRLMKEYGAL KHEQSTNSSV ASMVQGPPPQ  240
MTASVPVSIP DRSNAFHNIN PKLPPPPVPN RLPPASVTMN APASSSQAIS FPSGPTRGLN  300
YYQNLIHQHG GERQEPLQQH GMQFAMHHQP LASQASAADV VSSGAMPARD TKQRPTKPCA  360
YFNSARGCRN GANCTFLHDV SAARKEQSKG SKRIKLDSRI AGRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.28140.0ear| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G046968
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G046968_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0608140.0BT060814.1 Zea mays full-length cDNA clone ZM_BFb0053I10 mRNA, complete cds.
GenBankEU9578310.0EU957831.1 Zea mays clone 1624957 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148157.10.0zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ7XM161e-139C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBLB6SYL60.0B6SYL6_MAIZE; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGGRMZM2G046968_P010.0(Zea mays)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]