PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G047370_P02

Common Name

LOC100280076, ZEAMMB73_439147

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Trihelix

Protein Properties

Length: 319aa MW: 34753.7 Da PI: 7.0234

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G047370_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.6	2.5e-26	47	116	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + ++++ GRMZM2G047370_P02 47 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHSRNS 116 ***************************************************************9998864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.513	39	103	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.3E-5	40	105	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-6	43	105	IPR001005	SANT/Myb domain
CDD	cd12203	2.19E-27	45	110	No hit	No description
Pfam	PF13837	9.2E-19	46	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MLLSGPPPVP TPPLLLPESS GEDGGHDSSS RAAAAVGSAP KRRAETWVRE ETLCLIALRR 60 EMDAHFNTSK SNKHLWEAIS ARMRDQGFDR SPTMCTDKWR NLLKEFKKAR SHSRNSGGGS 120 GSGGNGNAKM AYYKEIDDLL KRRGKATGSG TAGCVGSSAG KSPKSNCKID SYLQFTTDNG 180 FEDANIPFGP VEANGRTILS IDDRLEDDRH QLPLTAADAV ATNGVNPWNW RDTSTDGGDN 240 RGNFGGRVIL VKWGDYTKRI GIDGTPEAIK EAIKSAFGLR TRRAFWLEDE DEVVRTLDRD 300 MPVGTYTLNL DDGTCELSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	9e-40	41	135	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.99693	0.0	ovary\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G047370

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G047370_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055522	0.0	BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBank	KJ727951	0.0	KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146488.1	0.0	uncharacterized LOC100280076
Swissprot	Q9FX53	1e-119	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	K7TUB3	0.0	K7TUB3_MAIZE; Trihelix transcription factor GT-1
STRING	GRMZM2G047370_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-104	Trihelix family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G047370_P02

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]