PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048136_P01
Common NameLOC100283510, ZEAMMB73_238341
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 163aa    MW: 18617.3 Da    PI: 7.4612
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048136_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16243548
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +++E+ +++++++++G++ W++Iar+++ gRt++++k++w++++
  GRMZM2G048136_P01  2 SPQEERIIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                       89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.78147IPR017930Myb domain
CDDcd001672.30E-12143No hitNo description
SMARTSM007171.5E-11145IPR001005SANT/Myb domain
PfamPF002496.1E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-20244IPR009057Homeodomain-like
SuperFamilySSF466897.72E-13248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009074anatomystyle
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSPQEERIII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMGMPSPSSS  60
SSSLTYQTCL LDTIPVIGMG SGDTHNGSCV TSTLENTQSV MDGYPMDQIW KEIEAPHAPN  120
LLSIAEGKEK TCSSSPCHLP SPVMWDYKCP EIFWKMGDQE IMM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.206820.0aerial organ| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048136
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048136_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278980.0KJ727898.1 Zea mays clone pUT5992 MYB transcription factor (MYB88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149882.11e-118MYB59
SwissprotQ53NK62e-75MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLK7UNQ81e-118K7UNQ8_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G048136_P021e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.14e-31myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]