PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048136_P02
Common NameLOC100283510, MYB88, ZEAMMB73_238341
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 228aa    MW: 26308.2 Da    PI: 8.4909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048136_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-171057148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  GRMZM2G048136_P02 10 KGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYL 57
                       79********************************************97 PP
2Myb_DNA-binding54.82.2e-1764108248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        gr++++E+ +++++++++G++ W++Iar+++ gRt++++k++w++++
  GRMZM2G048136_P02  64 GRMSPQEERIIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                        89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.19557IPR017930Myb domain
SuperFamilySSF466892.32E-298104IPR009057Homeodomain-like
SMARTSM007173.3E-14959IPR001005SANT/Myb domain
PfamPF002497.2E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-191164IPR009057Homeodomain-like
CDDcd001671.77E-101257No hitNo description
PROSITE profilePS5129426.07158112IPR017930Myb domain
SMARTSM007172.5E-1662110IPR001005SANT/Myb domain
PfamPF002491.6E-1564107IPR001005SANT/Myb domain
CDDcd001676.12E-1265108No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2465111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDIQ LVCTVRLFGD HRWDFIAQVS GLNRTGKSCR LRWVNYLHPG  60
LKHGRMSPQE ERIIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMGMP  120
SPSSSSSSLT YQTCLLDTIP VIGMGSGDTH NGSCVTSTLE NTQSVMDGYP MDQIWKEIEA  180
PHAPNLLSIA EGKEKTCSSS PCHLPSPVMW DYKCPEIFWK MGDQEIMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2771121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.206820.0aerial organ| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048136
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048136_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278980.0KJ727898.1 Zea mays clone pUT5992 MYB transcription factor (MYB88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149882.11e-171MYB59
SwissprotQ53NK61e-126MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A3L6EYF51e-170A0A3L6EYF5_MAIZE; Myb-related protein MYBAS1
TrEMBLK7TQE61e-170K7TQE6_MAIZE; MYB transcription factor
STRINGGRMZM2G048136_P021e-171(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-72myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]