PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G049027_P01
Common NameZm.127137
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 251aa    MW: 27293.2 Da    PI: 8.1038
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G049027_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06115134525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C+ +   G+C+ G++C++ H
  GRMZM2G049027_P01 115 ECNMYKM-GFCPNGPNCRYKH 134
                        6776666.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-55682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9575683IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-55783IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65781IPR000571Zinc finger, CCCH-type
SMARTSM003560.0184110IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59684109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831110137IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4116134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDDSDGGLSF DFEGGLDSAP ASGGGGPVPS STDPGAGVGG GGDGLGMHGR GRGRGSYRQT  60
VCRHWLRGLC MKGEACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK  120
MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY SQNRNNNYNH QGERPQHPQG  180
SGLPNQNSAE NATAVDPPAG GQQAQTLNQQ PPQQQQKPNT NDQAQGVSNG HQATRIATPL  240
PQGPSRCVWS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C1e-205813665145Cleavage and polyadenylation specificity factor subunit 4
6fbs_C7e-21813611144Cleavage and polyadenylation specificity factor subunit 4
6fuw_C7e-21813611144Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G049027
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G049027_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626790.0EU962679.1 Zea mays clone 244673 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394913.11e-178zinc finger CCCH domain-containing protein 45
SwissprotQ0DA501e-106C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A1D6LPN10.0A0A1D6LPN1_MAIZE; 30-kDa cleavage and polyadenylation specificity factor 30
STRINGGRMZM2G049027_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428
Representative plantOGRP499234