PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G050590_P01
Common NameE2F5, LOC100285276
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 468aa    MW: 50676.2 Da    PI: 5.8862
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G050590_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.75.4e-25192257171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn +rwkg
  GRMZM2G050590_P01 192 RYDSSLSLLTKKFINLLQGAEDGALDLNKAAETL---EV--QKRRIYDITNVLEGVHLIEKGLKNMVRWKG 257
                        6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-26189258IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-15192255IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-31192257IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.4E-22194257IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.72E-30268381No hitNo description
SuperFamilySSF1440741.1E-21269379No hitNo description
PfamPF164213.7E-24273378IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDGASSSLPL PQPPPQVYLR RPVPPPGPPL QAAPRVQPFS APAPIPIFSS KPRAAVRSPI  60
PPPHLPAAVT SAPAPLAATA EAPSRPPPAS TDQPPQQQTG AMPPPPAPAP AGKGGPKPKA  120
QLNEQNSGEY SQSENNVVET AQGHDKETTP GPVKATKRIK KLKASKHNLN NTNSGAIEGD  180
ADPSLSSLNH CRYDSSLSLL TKKFINLLQG AEDGALDLNK AAETLEVQKR RIYDITNVLE  240
GVHLIEKGLK NMVRWKGFDI SKPKDIERQI SSLKEELESL YDEELRLDDE IREAKEKLQA  300
LALDGDKRKS LYLLKEDINK IPHFQRSTMI AINAPRGTCV EVPDPNADQY MYGNLGLQEK  360
HYKIVLRSSM GPVDCYLISG DHEDIFNQGQ LVAADRLKPA VATDSSQDLQ QMDCDPNQAS  420
NGGCMHAAEP SRKQEIGILR IVPSDADADA DYWLASGVDV SMTDAWGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-21192257773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.240870.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G050590
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G050590_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268780.0KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151641.10.0uncharacterized protein LOC100285276
TrEMBLC0P8W80.0C0P8W8_MAIZE; E2F-DP transcription factor
STRINGGRMZM2G050590_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Representative plantOGRP1478044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-69E2F transcription factor 1