PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G050939_P06
Common NameTFIIIA
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 113aa    MW: 12616.4 Da    PI: 8.0674
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G050939_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.95.1e-087292323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C+ Cg+sF+ + +Lk+H+++H
  GRMZM2G050939_P06 72 CEQCGMSFKKQAHLKQHMQSH 92
                       *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-72192No hitNo description
SMARTSM00355142345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6357097IPR007087Zinc finger, C2H2
SMARTSM003550.0087092IPR015880Zinc finger, C2H2-like
PfamPF000969.1E-67292IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-77293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGEGTESGGG ATTAPPLRYI RCYKCGFCDV VRSKKCLLRA HVLEHHKDEV DALGGYWEGG  60
DAGPRKEISR ACEQCGMSFK KQAHLKQHMQ SHSLEIQMCE ALDLKELQNA RRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.304081e-160meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G050939
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G050939_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0628020.0BT062802.1 Zea mays full-length cDNA clone ZM_BFb0348B01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349023.19e-63uncharacterized LOC100383605 isoform 1
TrEMBLC0J7J81e-78C0J7J8_MAIZE; Truncated transcription factor IIIA EI isoform (Fragment)
STRINGGRMZM2G050939_P024e-62(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-13transcription factor IIIA
Publications ? help Back to Top
  1. Fu Y, et al.
    Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA.
    Genome Res., 2009. 19(5): p. 913-21
    [PMID:19211543]