PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G051955_P01
Common NameZHD20, Zm.124882
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 361aa    MW: 37714.3 Da    PI: 7.9004
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G051955_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.95.8e-343488558
        ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                        Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr+ve
  GRMZM2G051955_P01 34 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRTVE 88
                       7***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-283487IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1723586IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-223585IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.9E-313586IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.36E-16209277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-28211278IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-22219275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEAMDVKYKP VMFPNGAAFK KAKPAAVAPA GEPLYRECLK NHAASLGGHA VDGCGEFMPS  60
PGANPADPTS LKCAACGCHR NFHRRTVEGS PPQPAPAPLA LPPPPPPPPS VLHGQTHRGG  120
EDTPEDRHPG VVDADDPDSD SEGSEYDEER SVSPPPPHHV PAPVAQQPPP PSYFPAAAPH  180
QHMLLSLGPG AAVAAAAQRL APAQLTPSSA PPPGGAMPRK RFRTKFTAEQ KQRMQELSER  240
LGWRLQKRDE AVVDEWCRDM GVGKGVFKVW MHNNKHNFLG GHSARRSVSA SSGAAALLQT  300
PCANAGAAAP SFNPSRLTPP PPVLTSSPTG FNINGAASSS PPTVTADHTD NANGASSPHS  360
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-212192771775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1248820.0cell lignification
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G051955
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G051955_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1652670.0AC165267.2 Zea mays clone ZMMBBb-151F20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150690.20.0ZF-HD homeobox protein
SwissprotQ6ER213e-94ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A060CVL00.0A0A060CVL0_MAIZE; ZF-HD homeobox protein (Fragment)
TrEMBLA0A3L6FPQ50.0A0A3L6FPQ5_MAIZE; Zinc-finger homeodomain protein 9
STRINGGRMZM2G051955_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP1472434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-25zinc finger homeodomain 1