PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052616_P01
Common NameGATA27, LOC100273183
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 127aa    MW: 13842.7 Da    PI: 10.4075
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052616_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.9e-202256135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  GRMZM2G052616_P01 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2571652IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-161668IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-141859No hitNo description
Gene3DG3DSA:3.30.50.102.8E-162057IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.54E-132157No hitNo description
PfamPF003201.5E-172256IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGSADRSKID GIVVPEKGAR SCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQELG  60
LEHNKQQQQQ QNNGEAKTGV KDSSSNSSSG SSNFHVVQKR RLLMEVEEAA LLLMTLSSSP  120
ASTLLHG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.858250.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052616
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052616_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403890.0BT040389.1 Zea mays full-length cDNA clone ZM_BFc0088I05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141100.13e-90uncharacterized protein LOC100273183
TrEMBLB4FTF18e-89B4FTF1_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G052616_P011e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.19e-19GATA transcription factor 23