PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G053503_P02
Common NameEREB148, ERF1, ZEAMMB73_889393
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 230aa    MW: 24762.8 Da    PI: 8.8669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G053503_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1959109256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  GRMZM2G053503_P02  59 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 109
                        69*******.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-1659116No hitNo description
Gene3DG3DSA:3.30.730.104.8E-3259117IPR001471AP2/ERF domain
PROSITE profilePS5103224.48759116IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2259117IPR016177DNA-binding domain
SMARTSM003801.2E-3759122IPR001471AP2/ERF domain
PRINTSPR003674.5E-116071IPR001471AP2/ERF domain
PfamPF008471.3E-1260108IPR001471AP2/ERF domain
PRINTSPR003674.5E-118298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MCGGAIIFDY IPARRRVSTA DFWPGSEADA EDIHASHSTD PQRAPPPRAK AKPGRRKNQY  60
RGIRQRPWGK WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPSDTS  120
SSVTVPTAVS RSAAAAAAQA PAVLPLPKVE AQTQVSDEVK ELSEELMAYE NYMNFLGIPY  180
MEGGTTAASA TTAAASAAAG VAEESQVPAP AGLWSFEDYY YPPSLSLFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2259122569ATERF1
3gcc_A1e-2259122569ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.114410.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G053503
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G053503_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701030.0EU970103.1 Zea mays clone 339751 ethylene-responsive factor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105270.21e-166ethylene-responsive factor-like protein 1
TrEMBLB6TYN81e-165B6TYN8_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G053503_P021e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-22ERF family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]