PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G054125_P01

Common Name

ZEAMMB73_567891, Zm.149431

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WRKY

Protein Properties

Length: 229aa MW: 24730.2 Da PI: 9.9838

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G054125_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.3	3.1e-33	137	195	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ GRMZM2G054125_P01 137 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 195 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.0E-35	122	195	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-30	129	196	IPR003657	WRKY domain
PROSITE profile	PS50811	30.228	132	197	IPR003657	WRKY domain
SMART	SM00774	1.0E-39	137	196	IPR003657	WRKY domain
Pfam	PF03106	3.3E-27	138	195	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MENYHMLFGR PSTQPSSAAT SNSYNFMLPT AGSTSGGGGG LRDHDRGGGQ HSGHAGGVPS 60 SSSFFAEPSN TSSKDSGAAA SSPPPAAGIG RGEEPAAGTP PAAAEVDGRL QAGKRKGEKK 120 ERRPRFAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSY YRCTHQGCNV KKQVQRLSRD 180 EGVVVTTYEG THTHPIEKSN DNFEHILTQM QIYSGMGSTF SSSSHNMFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	128	196	8	76	Probable WRKY transcription factor 4
2lex_A	4e-27	128	196	8	76	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G054125

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G054125_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728200	1e-161	KJ728200.1 Zea mays clone pUT6475 WRKY transcription factor (WRKY108) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008678126.1	1e-171	probable WRKY transcription factor 24
TrEMBL	K7TZX4	1e-170	K7TZX4_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRING	GRMZM2G054125_P01	1e-170	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-55	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	GRMZM2G054125_P01
Entrez Gene	103652912