PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054252_P01
Common Namepco113991
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 230aa    MW: 24641.2 Da    PI: 11.1472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054252_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.67.5e-30231681128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvka.eekewyfFskrdkkyatgk...rknratksgyWka 85 
                        lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ + d+y+ +Pwd  +  + ++ +e e yfF+ r  +  +++     +ra++ g+Wk 
  GRMZM2G054252_P01  23 LPPGFRFRPTDEELVVQYLRRKAIGVPLPA-AVIPVFrDLYSRDPWDVVAvsAPDTrSEGEKYFFAVRPASGGKSSgagTGSRAAAGGRWKP 113
                        79***************************9.7899888**********73232222234488****99887665333337789999****** PP

                NAM  86 tgkdkevlsk.....kgelvglkktLvfykgrapkge.......ktdWvmheyrl 128
                        +gk+k+v+       ++ lvg+k+ ++f   r++k+        kt Wvmheyrl
  GRMZM2G054252_P01 114 SGKEKPVVLPrpcggGSLLVGVKRAMTFVPRRRKKTAalpsaalKTGWVMHEYRL 168
                        ********99899877777**********443333333555666*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-4121194IPR003441NAC domain
PROSITE profilePS5100542.40823194IPR003441NAC domain
PfamPF023651.0E-2024168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSAERAPVLV RHGGGGVEAL RQLPPGFRFR PTDEELVVQY LRRKAIGVPL PAAVIPVFRD  60
LYSRDPWDVV AVSAPDTRSE GEKYFFAVRP ASGGKSSGAG TGSRAAAGGR WKPSGKEKPV  120
VLPRPCGGGS LLVGVKRAMT FVPRRRKKTA ALPSAALKTG WVMHEYRLAA PLHKNGCSLA  180
QAQGEWVVCR VFQKGGNRPR RRQREASPPP SASSSCVTDA SSSDLDEVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-262319417165NO APICAL MERISTEM PROTEIN
1ut4_B4e-262319417165NO APICAL MERISTEM PROTEIN
1ut7_A4e-262319417165NO APICAL MERISTEM PROTEIN
1ut7_B4e-262319417165NO APICAL MERISTEM PROTEIN
4dul_A4e-262319417165NAC domain-containing protein 19
4dul_B4e-262319417165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146PRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.93840.0aerial organ| glume| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054252
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054252_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555060.0EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674071.11e-155uncharacterized protein LOC100281072 isoform X1
TrEMBLA0A1D6KKC41e-163A0A1D6KKC4_MAIZE; NAC domain-containing protein 68
STRINGGRMZM2G054252_P021e-154(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.15e-30NAC domain containing protein 41