PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054252_P02
Common Namepco113991
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 231aa    MW: 24712.3 Da    PI: 11.1472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054252_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.58.3e-30231691128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk....kvka.eekewyfFskrdkkyatgk...rknratksgyW 83 
                        lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ + d+y+ +Pwd  +    + ++ +e e yfF+ r  +  +++     +ra++ g+W
  GRMZM2G054252_P02  23 LPPGFRFRPTDEELVVQYLRRKAIGVPLPA-AVIPVFrDLYSRDPWDVVAvsapA-DTrSEGEKYFFAVRPASGGKSSgagTGSRAAAGGRW 112
                        79***************************9.7899888**********7333331.22234488****99887665333337789999**** PP

                NAM  84 katgkdkevlsk.....kgelvglkktLvfykgrapkge.......ktdWvmheyrl 128
                        k +gk+k+v+       ++ lvg+k+ ++f   r++k+        kt Wvmheyrl
  GRMZM2G054252_P02 113 KPSGKEKPVVLPrpcggGSLLVGVKRAMTFVPRRRKKTAalpsaalKTGWVMHEYRL 169
                        **********99899877777**********443333333555666*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-4121195IPR003441NAC domain
PROSITE profilePS5100542.35423195IPR003441NAC domain
PfamPF023651.1E-2024169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSAERAPVLV RHGGGGVEAL RQLPPGFRFR PTDEELVVQY LRRKAIGVPL PAAVIPVFRD  60
LYSRDPWDVV AVSAPADTRS EGEKYFFAVR PASGGKSSGA GTGSRAAAGG RWKPSGKEKP  120
VVLPRPCGGG SLLVGVKRAM TFVPRRRKKT AALPSAALKT GWVMHEYRLA APLHKNGCSL  180
AQAQGEWVVC RVFQKGGNRP RRRQREASPP PSASSSCVTD ASSSDLDEVS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-262319517165NO APICAL MERISTEM PROTEIN
1ut4_B8e-262319517165NO APICAL MERISTEM PROTEIN
1ut7_A8e-262319517165NO APICAL MERISTEM PROTEIN
1ut7_B8e-262319517165NO APICAL MERISTEM PROTEIN
3swm_A9e-262319520168NAC domain-containing protein 19
3swm_B9e-262319520168NAC domain-containing protein 19
3swm_C9e-262319520168NAC domain-containing protein 19
3swm_D9e-262319520168NAC domain-containing protein 19
3swp_A9e-262319520168NAC domain-containing protein 19
3swp_B9e-262319520168NAC domain-containing protein 19
3swp_C9e-262319520168NAC domain-containing protein 19
3swp_D9e-262319520168NAC domain-containing protein 19
4dul_A8e-262319517165NAC domain-containing protein 19
4dul_B8e-262319517165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147PRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.93840.0aerial organ| glume| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054252
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054252_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555060.0EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674071.11e-165uncharacterized protein LOC100281072 isoform X1
TrEMBLA0A1D6KKC51e-164A0A1D6KKC5_MAIZE; NAC domain-containing protein 68
STRINGGRMZM2G054252_P021e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Representative plantOGRP1456244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.16e-31NAC domain containing protein 41
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]