PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054795_P01
Common NameLOC100193442
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 254aa    MW: 27431.2 Da    PI: 6.6961
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054795_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY195.72e-60232197170
              YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee........................... 70 
                         eq+Cyv+C++C+tilav vP +slf++vtvrCGhC++ll vnl+      aa +++l   +++                            
  GRMZM2G054795_P01  23 QEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAaNNQLPPFGQPLlsptsphglldaeamsfqapslpgaep 114
                        79******************************************9988655540555544444448889999*********99999888776 PP

              YABBY  71 ...lleelkveeenlksnvekeesastsvssekl.......senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishre 151
                            +    + ++++  n++++++ s+      +         +e +++pr+   v+r  ekrqrvPsaynrfik+eiqrikasnPdi+hre
  GRMZM2G054795_P01 115 psaCVSGVTSINNTCGGNTTTSSAMSS------MapppakhALQEAQQLPRTAAsVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHRE 200
                        666334444444444444333333332......2333333377788889998766************************************* PP

              YABBY 152 afsaaaknWahfPkihfgl 170
                        afsaaaknWahfP+ihfgl
  GRMZM2G054795_P01 201 AFSAAAKNWAHFPHIHFGL 219
                        *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-6622219IPR006780YABBY protein
SuperFamilySSF470952.62E-7163212IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4171211IPR009071High mobility group box domain
CDDcd000847.52E-5173209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMSSAPEETL FNLDQQQPPP AEQEQICYVH CSYCDTILAV GVPCSSLFQT VTVRCGHCSN  60
LLYVNLRALL LPAAAANNQL PPFGQPLLSP TSPHGLLDAE AMSFQAPSLP GAEPPSACVS  120
GVTSINNTCG GNTTTSSAMS SMAPPPAKHA LQEAQQLPRT AASVNRTSEK RQRVPSAYNR  180
FIKDEIQRIK ASNPDITHRE AFSAAAKNWA HFPHIHFGLM PDQGLKKNPM QNQEGAECML  240
FMDGLYASMG FSPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.239980.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054795
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054795_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357060.0BT035706.1 Zea mays full-length cDNA clone ZM_BFb0078M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132033.10.0putative YABBY domain transcription factor family protein
SwissprotQ01JG21e-109YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-109YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A3L6FS290.0A0A3L6FS29_MAIZE; Protein YABBY 5
TrEMBLB4FF180.0B4FF18_MAIZE; Axial regulator YABBY 1
STRINGGRMZM2G054795_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP1734323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-41YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]