PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054795_P02
Common NameLOC100193442
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 246aa    MW: 26551.2 Da    PI: 7.1636
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054795_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY199.91.1e-61232117170
              YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee......................lleel 75 
                         eq+Cyv+C++C+tilav vP +slf++vtvrCGhC++ll vnl+      aa +++l   +++                        +   
  GRMZM2G054795_P02  23 QEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAaNNQLPPFGQPLlsptsphgllapslpgaeppsaCVSGV 114
                        79******************************************9988655540555544444448889999**999988877666634444 PP

              YABBY  76 kveeenlksnvekeesastsvssekl.......senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                         + ++++  n++++++ s+      +         +e +++pr+   v+r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn
  GRMZM2G054795_P02 115 TSINNTCGGNTTTSSAMSS------MapppakhALQEAQQLPRTAAsVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 200
                        4444444444333333333......2333333377788889998766********************************************* PP

              YABBY 160 WahfPkihfgl 170
                        WahfP+ihfgl
  GRMZM2G054795_P02 201 WAHFPHIHFGL 211
                        *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.3E-6822211IPR006780YABBY protein
SuperFamilySSF470952.49E-7155204IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-4163203IPR009071High mobility group box domain
CDDcd000847.07E-5165201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMSSAPEETL FNLDQQQPPP AEQEQICYVH CSYCDTILAV GVPCSSLFQT VTVRCGHCSN  60
LLYVNLRALL LPAAAANNQL PPFGQPLLSP TSPHGLLAPS LPGAEPPSAC VSGVTSINNT  120
CGGNTTTSSA MSSMAPPPAK HALQEAQQLP RTAASVNRTS EKRQRVPSAY NRFIKDEIQR  180
IKASNPDITH REAFSAAAKN WAHFPHIHFG LMPDQGLKKN PMQNQEGAEC MLFMDGLYAS  240
MGFSPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.239980.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054795
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054795_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622430.0BT062243.1 Zea mays full-length cDNA clone ZM_BFb0231O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667172.10.0putative YABBY domain transcription factor family protein isoform X1
SwissprotQ01JG21e-105YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-105YAB5_ORYSJ; Protein YABBY 5
TrEMBLC0HIT70.0C0HIT7_MAIZE; C2C2-YABBY transcription factor
STRINGGRMZM2G054795_P011e-168(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-41YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]