PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G055135_P03
Common NameTIDP2780, ZEAMMB73_950191
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 198aa    MW: 21531.2 Da    PI: 8.4509
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G055135_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.6e-132751125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C gCr+lL+YP+GA+sV+Ca+C tV
  GRMZM2G055135_P03 27 CTGCRNLLMYPAGATSVCCAVCSTV 51
                       9**********************99 PP
2zf-LSD146.27.7e-156690125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggC+tlL+Y rGA+sV+C++C+tV
  GRMZM2G055135_P03 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
                       ************************9 PP
3zf-LSD137.83.2e-12104128125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr lL+Y +GA+sV+Ca+C +V
  GRMZM2G055135_P03 104 CGNCRMLLMYQYGARSVKCAVCSFV 128
                        **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-122454IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-102751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-146392IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.5E-11101130IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-11104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPVPLAPYPA PPAPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARSV  120
KCAVCSFVTS VGVSTQSILF QKRMQLTNNV FCCRRLPLFR CYSYCKTTCV SHEKQRTNRQ  180
VSLYSDLTWC RAEAQQLS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.942610.0aerial organ| ear| endosperm| glume| meristem| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G055135
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G055135_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670110.0BT067011.1 Zea mays full-length cDNA clone ZM_BFb0148P15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407188.11e-143uncharacterized protein LOC100285579 isoform X1
SwissprotQ0J7V94e-79LSD1_ORYSJ; Protein LSD1
TrEMBLK7URP21e-142K7URP2_MAIZE; LOL1
STRINGGRMZM2G055135_P071e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-59lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]