PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G055135_P05
Common NameTIDP2780, ZEAMMB73_950191
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 105aa    MW: 10891.8 Da    PI: 7.5743
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G055135_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.35.9e-142751125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C gCr+lL+YP+GA+sV+Ca+C tV
  GRMZM2G055135_P05 27 CTGCRNLLMYPAGATSVCCAVCSTV 51
                       9**********************99 PP
2zf-LSD147.52.8e-156690125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggC+tlL+Y rGA+sV+C++C+tV
  GRMZM2G055135_P05 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
                       ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.5E-132454IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-156392IPR005735Zinc finger, LSD1-type
PfamPF069437.7E-136690IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MPVPLAPYPA PPAPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEERWKS LTGMS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.942617e-94aerial organ| ear| endosperm| glume| meristem| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G055135
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G055135_P05
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9729821e-159EU972982.1 Zea mays clone 391080 LOL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941225.11e-54protein LSD1 isoform X2
RefseqXP_010941226.11e-54protein LSD1 isoform X2
SwissprotQ0J7V92e-51LSD1_ORYSJ; Protein LSD1
TrEMBLK7TWY23e-61K7TWY2_MAIZE; LOL1
STRINGGRMZM2G055135_P072e-61(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-32lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]