PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056929_P02
Common NameLOC103646512
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8867.6 Da    PI: 10.4802
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056929_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.21.4e-411180270
               S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                       +v ++e+ kGlnPG++vllvv+++ll+f+vgny++yvyaqk+lPP+kkkPvskkklkreklkqGv++PGe
  GRMZM2G056929_P02 11 NVIIEEVnKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80
                       55667778*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190132.0E-71280No hitNo description
PfamPF046899.2E-391680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MADQFVDSAN NVIIEEVNKG LNPGMVVLLV VASFLLLFFV GNYAMYVYAQ KTLPPKKKKP  60
VSKKKLKREK LKQGVSAPGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.946801e-113ear| embryo| endosperm| meristem| ovary| pedicel| root| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056929
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056929_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9587881e-124EU958788.1 Zea mays clone 207858 DNA-binding protein S1FA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316616.11e-50DNA-binding protein S1FA
SwissprotQ7XLX63e-33S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A1D6EBT53e-49A0A1D6EBT5_MAIZE; DNA-binding protein S1FA
STRINGGRMZM2G056929_P025e-50(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Representative plantOGRP50951322
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]