PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G057116_P01
Common NameZEAMMB73_750992, Zm.82925
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 205aa    MW: 22045.1 Da    PI: 7.0399
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G057116_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30107165159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh 
  GRMZM2G057116_P01 107 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 165
                        59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-3395167IPR003657WRKY domain
SuperFamilySSF1182906.41E-2899167IPR003657WRKY domain
PROSITE profilePS5081131.996102167IPR003657WRKY domain
SMARTSM007741.2E-35107166IPR003657WRKY domain
PfamPF031061.7E-24108164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATSLGLNPE DLFTSYSSSY YSSPPFMSDY AASFTPAAGD STAFSSELDD LHHFDYSPAP  60
IVTAAGAGAG GGDRNEKMMW CEGGGDERRL RSNGRIGFRT RSEVEILDDG FKWRKYGKKA  120
VKNSPNPRNY YRCSSEGCGV KKRVERDRDD PRYVITTYDG VHNHASPGAA AIIVPYGSGG  180
GNSGFYSPPH SGSPSATSYS GSLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2792167277Probable WRKY transcription factor 4
2lex_A1e-2792167277Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1247830.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G057116
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G057116_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0644570.0BT064457.1 Zea mays full-length cDNA clone ZM_BFc0171E09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316724.11e-149uncharacterized protein LOC100193498
TrEMBLA0A3L6DPP41e-148A0A3L6DPP4_MAIZE; Putative WRKY transcription factor 50
TrEMBLC0P8381e-148C0P838_MAIZE; Putative WRKY transcription factor 50
STRINGGRMZM2G057116_P011e-149(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-41WRKY DNA-binding protein 50