PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G057131_P01
Common NameLOC100284670
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 331aa    MW: 37579.1 Da    PI: 9.5142
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G057131_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.64.4e-27198247352
             RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ++i+l d+++yF+lpi+dA+k+L++++++LKr+CRqyGI+RWPhRkiksl
  GRMZM2G057131_P01 198 DSITLVDIAQYFHLPIRDASKTLKIGVSILKRKCRQYGIPRWPHRKIKSL 247
                        689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.645182268IPR003035RWP-RK domain
PfamPF020425.0E-22199247IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDAAVSTLTA LAIFASTVEH AAYRSVQGYR VVGRKGGGWV RWERWVERQF VLSLSFPRCV  60
EVALPAAAPR ILPAGWRSRP VFREGQTVDT WRCIVAFDSV AAVAPSSPPP PVLSPFVNPQ  120
LQYLSNLYND LLMVFRFREE KTVPQLVNSK QPIRCGEQGK TSDLGDASES DSDGDCQSGK  180
ELAPPVQKHT RANRKHIDSI TLVDIAQYFH LPIRDASKTL KIGVSILKRK CRQYGIPRWP  240
HRKIKSLDSL IHDLEFVLAR EDEDEEEEKQ LQKDRLAAAI NALTKRKSML ESEKETIQQK  300
PAMDLMAETK LFREDVFKRR YRAKSSVMDM D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.109010.0cell lignification| endosperm| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G057131
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G057131_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587690.0HQ858769.1 Zea mays clone UT1753 NLP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151037.10.0RWP-RK domain containing protein
TrEMBLF1DK110.0F1DK11_MAIZE; NLP transcription factor (Fragment)
STRINGGRMZM2G057131_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.14e-38RWP-RK domain-containing protein