PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G057131_P03

Common Name

LOC100284670

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Nin-like

Protein Properties

Length: 199aa MW: 22998.3 Da PI: 9.1532

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G057131_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.8	1.9e-27	66	115	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi+dA+k+L++++++LKr+CRqyGI+RWPhRkiksl GRMZM2G057131_P03 66 DSITLVDIAQYFHLPIRDASKTLKIGVSILKRKCRQYGIPRWPHRKIKSL 115 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.645	50	136	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-22	67	115	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVFRFREEKT VPQLVNSKQP IRCGEQGKTS DLGDASESDS DGDCQSGKEL APPVQKHTRA 60 NRKHIDSITL VDIAQYFHLP IRDASKTLKI GVSILKRKCR QYGIPRWPHR KIKSLDSLIH 120 DLEFVLARED EDEEEEKQLQ KDRLAAAINA LTKRKSMLES EKETIQQKPA MDLMAETKLF 180 REDVFKRRYR AKSSVMDMD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.10901	0.0	cell lignification\| endosperm\| meristem\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G057131

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G057131_P03

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037348	0.0	BT037348.1 Zea mays full-length cDNA clone ZM_BFb0165E20 mRNA, complete cds.
GenBank	EU969263	0.0	EU969263.1 Zea mays clone 327733 RWP-RK domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151037.1	1e-144	RWP-RK domain containing protein
TrEMBL	B4FJR0	1e-143	B4FJR0_MAIZE; Uncharacterized protein
TrEMBL	B6TW98	1e-143	B6TW98_MAIZE; RWP-RK domain containing protein
TrEMBL	F1DK11	1e-143	F1DK11_MAIZE; NLP transcription factor (Fragment)
STRING	GRMZM2G057131_P02	1e-142	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-35	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	GRMZM2G057131_P03