PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G058479_P01
Common NameLOC100277669, ZIM36, Zm.96553
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 357aa    MW: 38002 Da    PI: 4.9808
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G058479_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.5e-17268304135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgt    Tp++Rrgpdg++tLCnaCGl+++ kgl
  GRMZM2G058479_P01 268 CHHCGTNAtaTPMMRRGPDGPRTLCNACGLMWANKGL 304
                        ******9989***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.373133168IPR010399Tify domain
SMARTSM009799.6E-12133168IPR010399Tify domain
PfamPF062005.5E-13136167IPR010399Tify domain
PfamPF062038.4E-16192234IPR010402CCT domain
PROSITE profilePS5101713.404192234IPR010402CCT domain
PROSITE profilePS501149.605262319IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-12262320IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12266314No hitNo description
CDDcd002027.40E-15267310No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15267308IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-15268304IPR000679Zinc finger, GATA-type
PROSITE patternPS003440268295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERHP QPADGIAAPP PAAVAPSVEH LVAAAAEAEA LNRFAAEQQQ  60
QLQGHEQEVG EEEEEEDEQE DEMEEEDEDE HEGQHGGIGG EHVPMDADAA AAAAAAAVSQ  120
MDPHSALVAG TVPPMATNQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGRE LSSLGGASSS  180
APYSKRLNYP HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKPDE  240
IAASEMASAD GSPNWALVEG RPPSAAECHH CGTNATATPM MRRGPDGPRT LCNACGLMWA  300
NKGLLRDVTK SPVPLQATQS APHLDGGNGS AMSAPGSELE NAAAAMTNGH ESSSSGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.965530.0cell lignification| ear| endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G058479
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G058479_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5128720.0KU512872.1 Zea mays TIFY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144648.20.0uncharacterized protein LOC100277669
SwissprotQ5Z4U51e-140GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A060D7770.0A0A060D777_MAIZE; GATA transcription factor 24 (Fragment)
STRINGGRMZM2G058479_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-64ZIM-like 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]