PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059102_P02
Common NameZm.5854
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21009.1 Da    PI: 9.9127
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059102_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-251463251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  GRMZM2G059102_P02 14 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 63
                       89********************************************9986 PP
2K-box48.44e-17901761298
              K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         ++   +   a+Lk+e+ +   ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k  +l een +L++++
  GRMZM2G059102_P02  90 LQSHMDDGTCARLKEELAETSLKLRQMRGEELQRLSVEQLQELEKTLESGLGSVLKTKSQKILDEISGLERKRTQLIEENSRLKEQV 176
                        33334455789*************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-33564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.137565IPR002100Transcription factor, MADS-box
PROSITE patternPS003500761IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-25727IPR002100Transcription factor, MADS-box
CDDcd002653.27E-37778No hitNo description
SuperFamilySSF554552.35E-29779IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241461IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-252742IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-254263IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.54792182IPR002487Transcription factor, K-box
PfamPF014867.5E-1598176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVGTGKRERI AIRRIDNLAA RQVTFSKRRR GLFKKAEELS ILCDAEVGLV VFSATGKLFH  60
FASSSMKQVI DRYDSHSKTL QRSEPQSSQL QSHMDDGTCA RLKEELAETS LKLRQMRGEE  120
LQRLSVEQLQ ELEKTLESGL GSVLKTKSQK ILDEISGLER KRTQLIEENS RLKEQVNPCS  180
LSPTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19794384MEF2C
5f28_B1e-19794384MEF2C
5f28_C1e-19794384MEF2C
5f28_D1e-19794384MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.58540.0cell lignification| ear| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059102
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059102_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0616080.0BT061608.1 Zea mays full-length cDNA clone ZM_BFb0164I07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306702.11e-121MADS-box transcription factor 47
SwissprotQ5K4R01e-100MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLC0HH021e-130C0HH02_MAIZE; Uncharacterized protein
STRINGGRMZM2G059102_P031e-120(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]