PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G059428_P03

Common Name

Zm.34249

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NAC

Protein Properties

Length: 172aa MW: 19421.2 Da PI: 10.3119

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G059428_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.8	1.1e-49	17	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPt+eel+ +yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s GRMZM2G059428_P03 17 PGFRFHPTEEELLGFYLSRVVHGKQLHF-DIIGSLNIYRYDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRS 107 9***********************99.99***********99999************************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++glkktLvfy+grap+g+ktdWvm+eyrl GRMZM2G059428_P03 108 SadAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 143 9777888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-54	6	149	IPR003441	NAC domain
PROSITE profile	PS51005	50.978	15	172	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAVMAGAASM EVEQDLPGFR FHPTEEELLG FYLSRVVHGK QLHFDIIGSL NIYRYDPWDL 60 PAMAKIGERE WYFFVPRDRK AGSGGRPNRT TERGFWKATG SDRAIRSSAD AKRVIGLKKT 120 LVFYQGRAPR GTKTDWVMNE YRLPDHSAAG RAAPPLPPKV IQRSSAPLHF CT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-48	11	143	10	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G059428

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G059428_P03

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT084524	0.0	BT084524.1 Zea mays full-length cDNA clone ZM_BFb0127I09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344533.1	1e-114	uncharacterized protein LOC100501100
Swissprot	Q10S65	1e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1D6JMV6	1e-113	A0A1D6JMV6_MAIZE; NAC-transcription factor 53
STRING	GRMZM2G059428_P01	1e-113	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-73	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	GRMZM2G059428_P03

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]