PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059678_P01
Common NameZm.30314
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 356aa    MW: 39109 Da    PI: 8.9596
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059678_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.5e-13148186241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +kk CnC++skClk+YCeCfa+g++C+  C+C++C+N+ +
  GRMZM2G059678_P01 148 KKKCCNCRNSKCLKLYCECFASGTYCDG-CNCTNCFNNPD 186
                        799*************************.********986 PP
2TCR51.81.6e-16231270140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  GRMZM2G059678_P01 231 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 270
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-14147187IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.292148271IPR005172CRC domain
PfamPF036381.3E-9149184IPR005172CRC domain
SMARTSM011148.4E-20231272IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.9E-13234269IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEGNEQGCGG LPQRPPVLGA SMQPPIKKLV RQLDFNSAAL AGNPAMAVAA AAVSRVLQPK  60
ASSVGFQHPQ HVGAAMPMGV PQQLHQRVLP VMRLHQVVGH VPLAVSVPQL RPVPPQPVQR  120
PPVAVPLKPE SPKLRARLYE GKDSTPTKKK CCNCRNSKCL KLYCECFASG TYCDGCNCTN  180
CFNNPDNEVA RREAVEAILD RNPDAFRPKI GSSPHMHRNN EVPSDLPLVG KHNKGCHCKK  240
SGCLKKYCEC FQANILCSEN CKCMDCKNFE GSEERRNLFQ GDHKNAINMQ QVTNAAVNGA  300
IGATGFPSPS TSRKRKHNDP SLDHFNKEHI AHKNYHIPQE QAEVPCYITR SVSFFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3015227914131Protein lin-54 homolog
5fd3_B1e-3015227914131Protein lin-54 homolog
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059678
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059678_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672400.0BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds.
GenBankHQ8586710.0HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169566.10.0CPP transcription factor
SwissprotQ9SZD14e-92TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLC0PG210.0C0PG21_MAIZE; CPP transcription factor
STRINGGRMZM2G059678_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-79Tesmin/TSO1-like CXC domain-containing protein