PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059939_P02
Common NameLOC100273875
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family RAV
Protein Properties Length: 406aa    MW: 42894.4 Da    PI: 10.3152
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059939_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1272120155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  GRMZM2G059939_P02  72 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 120
                        89****9888.8*********......44**********99*************98 PP
2B393.51.4e-29206309190
                        EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                        f+k+ tpsdv+k++rlv+pk++ae+h              +g + +++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk++gL +gD
  GRMZM2G059939_P02 206 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaaaagvgSGGECKGVLLNFEDAAGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGD 297
                        89***************************9999999998844456999******************************************** PP

                        EEEEEE-SSSEE CS
                 B3  79 fvvFkldgrsef 90 
                         v F+++   ++
  GRMZM2G059939_P02 298 AVGFYRSAGGKQ 309
                        *****7754444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-2272128No hitNo description
PfamPF008472.8E-872120IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1672128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-1973128IPR001471AP2/ERF domain
SMARTSM003801.3E-2673134IPR001471AP2/ERF domain
PROSITE profilePS5103219.86273128IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.9E-40197324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29204317IPR015300DNA-binding pseudobarrel domain
CDDcd100176.21E-27204304No hitNo description
SMARTSM010194.2E-19206318IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816206317IPR003340B3 DNA binding domain
PfamPF023621.7E-26206312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDSTSCLVDD ASSGASTGKK PAPAPAAATG KPLQRVGSGT SAVMDAAEPG AEADSGGAGR  60
APGGVSGKLP SSKYKGVVPQ PNGRWGAQIY ERHQRVWLGT FTGEAEAARA YDVAAQRFRG  120
RDAVTNFRPL AESEPEAAVE LRFLASRSKA EVVDMLRKHT YGEELAHNRR AFAAASPAAS  180
PPPENNRRPP AASSSSSPAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPAAA  240
AAGVGSGGEC KGVLLNFEDA AGKAWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG  300
FYRSAGGKQQ LFIDCKLRPN KTTTTAAAFV NVNAMTTTAA PPLAAVKAVR LFGVDLLTTP  360
RPAAVAPEQE EVTVANKRAR DAMATAASTP APVHMVFKKQ CIDFAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4920331811117DNA-binding protein RAV1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059939
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059939_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141742.10.0uncharacterized protein LOC100273875
SwissprotQ6L4H41e-179Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLB4FXX40.0B4FXX4_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
STRINGGRMZM2G059939_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.17e-95related to ABI3/VP1 1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]