PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060057_P01
Common NameLOC107275235, Zm.64825
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 150aa    MW: 15809.2 Da    PI: 9.1755
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060057_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1261.5e-08730124
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                       C+gC+ l +Y rGA  VRC++Cd+
  GRMZM2G060057_P01  7 CSGCKRLVQYRRGAAGVRCPSCDA 30
                       ***********************8 PP
2zf-LSD131.62.6e-1086109124
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                        Cg+Crt+L+YP+GA+ V C+ C  
  GRMZM2G060057_P01  86 CGQCRTTLAYPPGATTVGCPTCRN 109
                        **********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-9432IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-7730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.2E-74669IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-74870IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.107.6E-463115IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010531.5E-883112IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-986110IPR005735Zinc finger, LSD1-type
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009054anatomyinflorescence bract
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MHSHLACSGC KRLVQYRRGA AGVRCPSCDA FTAAANPSGP PEMSELVCGG CFTMLVHSRG  60
AANVRCPHCG RLNSTRSGNQ MGHLSCGQCR TTLAYPPGAT TVGCPTCRNV NPVRDARAAP  120
QTVLVENPRT LDEKGKLVSN VAVGVASWKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060057
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060057_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555400.0BT055540.2 Zea mays full-length cDNA clone ZM_BFc0071L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307436.11e-106uncharacterized protein LOC107275235
SwissprotQ84UR01e-70LOL4_ORYSJ; Protein LOL4
TrEMBLA0A1D6LEY81e-105A0A1D6LEY8_MAIZE; Protein LSD1
TrEMBLA0A3L6E7071e-105A0A3L6E707_MAIZE; Protein LOL4
STRINGGRMZM2G060057_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-34LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]