PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060170_P04
Common NameLOC100284420
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 359aa    MW: 39940.1 Da    PI: 8.0099
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060170_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.7e-1466103340
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        +k+C Ckks+Clk+YC Cf+ g +Cs++C C+ C+Nke
  GRMZM2G060170_P04  66 CKHCACKKSRCLKLYCPCFSGGGYCSDKCGCQPCFNKE 103
                        89**********************************97 PP
2TCR506.1e-16151187339
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        k+gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  GRMZM2G060170_P04 151 KRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 187
                        78**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.9E-1364105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.56465189IPR005172CRC domain
PfamPF036388.2E-1067103IPR005172CRC domain
SMARTSM011141.2E-14149190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-11151186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEATPISMKP PSPAPAAPPP ATLEPGDLPT HAFGGTELEP SSMNQLAIAP DPKRPRVEEA  60
ADGNGCKHCA CKKSRCLKLY CPCFSGGGYC SDKCGCQPCF NKEAFAETVH TTRKVLLSRQ  120
KRMSMKINRR PEANTEPMED AHHSSSSTPP KRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR  180
CDDCQNPFGK NEGIMADDSK RYLYTGADLD HSEGEHDFVV ERSPRLQSPI SKESSFHQTP  240
PHLRASSRDA HVFPHAISQW QALPRSWHCS NKRNSSDRAM DDSANYKNSN HDYWQVPKHE  300
DSYSISKCVQ ILNGMAELSQ VEKSVAPDVF LQPGNREIFV SLSGDVRAMW LKRKIQHLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-126718612120Protein lin-54 homolog
5fd3_B1e-126718612120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.970340.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060170
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060170_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666400.0BT066640.1 Zea mays full-length cDNA clone ZM_BFb0041G13 mRNA, complete cds.
GenBankEU9682630.0EU968263.1 Zea mays clone 317842 CXC domain containing TSO1-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150787.10.0uncharacterized protein LOC100284420
TrEMBLB4FNP50.0B4FNP5_MAIZE; CXC domain containing TSO1-like protein 1
STRINGGRMZM2G060170_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Representative plantOGRP1200246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-41Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]