PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060444_P01
Common NameHDZIV12_OCL12
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 707aa    MW: 77255.8 Da    PI: 4.9198
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060444_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.97e-1373113545
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
           Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 
                         +ft +q+++Le+ F+ +r+p+ ++r+eLA+k+gL+erqVk
  GRMZM2G060444_P01  73 KRFTMDQIQQLEAQFRVCRHPNLDARQELAAKTGLEERQVK 113
                        36**************************************8 PP
2START100.43.2e-322124123205
                        HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
              START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                        ae+a++elv +a+ +ep+W       + + +++vlq+f+          +  ea r+s    ++++ lv+ l d + qW e+++        
  GRMZM2G060444_P01 212 AERAMEELVMLATKGEPMWLPAMdgeTLNHQEYVLQTFPGL-LglcppgFVEEATRESDTIRGTAMYLVSVLTDAN-QWCEMFP-------- 293
                        789*****************999886667789999999543.3699999999*******************99999.*******........ PP

                        CTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
              START  86 ssggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                           g++ +m ael + sp    R + f+R++++l+  +w+ +dvSv    +  e   s+  ++llpSg+l+e++s+g++kvtwv h+++++ 
  GRMZM2G060444_P01 294 ---GTVAYMDAELWVQSPRLLnRSVKFLRFSKKLSNRRWAMADVSVVDGVCGVEpGGSSTGCRLLPSGCLLEDMSGGYCKVTWVVHAEYDET 382
                        ...**************96655************************99999998878888889***************************** PP

                        XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 176 lphwllrslvksglaegaktwvatlqrqce 205
                        ++++l+r++++sg+a ga +w+++lqrqce
  GRMZM2G060444_P01 383 SVPSLFRPFLQSGQALGAYRWLRCLQRQCE 412
                        *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-1151113IPR009057Homeodomain-like
SuperFamilySSF466898.55E-1057113IPR009057Homeodomain-like
PROSITE profilePS500719.16766113IPR001356Homeobox domain
SMARTSM003892.9E-567124IPR001356Homeobox domain
CDDcd000867.66E-1168113No hitNo description
PfamPF000462.1E-1073113IPR001356Homeobox domain
SMARTSM002344.3E-8210413IPR002913START domain
PROSITE profilePS5084821.05212416IPR002913START domain
SuperFamilySSF559615.89E-16212412No hitNo description
PfamPF018521.9E-25212412IPR002913START domain
SuperFamilySSF559611.1E-5505633No hitNo description
SuperFamilySSF559611.1E-5661670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0001180developmental stageplant proembryo stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEKEGHQNNS SSNEQDHDGF TMDEIPDLSW SSHTEYDVDA LLGAVDQVNT TQTDDDEDQS  60
SHVSEQTPSN RTKRFTMDQI QQLEAQFRVC RHPNLDARQE LAAKTGLEER QVKACGDENK  120
GIRQELGKLK AENEELKQRM LNPICFRCRN PTLATQPTSE KRRLLNENAR LRDEYVRAKA  180
YLDRLIREGA ERRASPSAHL HLGGSATLVS HAERAMEELV MLATKGEPMW LPAMDGETLN  240
HQEYVLQTFP GLLGLCPPGF VEEATRESDT IRGTAMYLVS VLTDANQWCE MFPGTVAYMD  300
AELWVQSPRL LNRSVKFLRF SKKLSNRRWA MADVSVVDGV CGVEPGGSST GCRLLPSGCL  360
LEDMSGGYCK VTWVVHAEYD ETSVPSLFRP FLQSGQALGA YRWLRCLQRQ CEYITVLRSS  420
LVLPSSSSSF SAISTLGVGR RSVMELARRM TASFYAAVSG PVTVPATSSV DEWRVSSGSG  480
AERVEAVVRL AVWNCADIMP GEPAVTVLSA TTTVWLPGTP PMRVREYLFD LQRRGEWDAH  540
ADGGEVQELG SVATSSRLHG NAVSVLQSTS SVDTDGTDSK VLILQETTTD VSCSLVVYSL  600
VEENLMRGIM DGRERSNVFV LPSGFAILPD GHGRAHAGDT AATNSSASAA IDDDHSSNAA  660
GSLVTVAFQT PLPGNPDTGA FEDACLQLCH AIAKIKAAVG ASDIIPV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060444
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060444_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404892.10.0homeobox-leucine zipper protein ROC6
TrEMBLG2J5S60.0G2J5S6_MAIZE; Homeodomain leucine zipper family IV protein
STRINGGRMZM2G060444_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Representative plantOGRP1982022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.15e-95HD-ZIP family protein
Publications ? help Back to Top
  1. Javelle M, et al.
    Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis.
    Plant Physiol., 2011. 157(2): p. 790-803
    [PMID:21825105]