PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060507_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 191aa    MW: 22232.2 Da    PI: 6.3703
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060507_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74e-081411742154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  GRMZM2G060507_P01 141 KWPYPTEDDKARLVEETGLQLKQINNWFINQRKR 174
                        469*****************************87 PP
2ELK26.31.7e-0995116122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK +L++++++++ ++++E++
  GRMZM2G060507_P01  95 ELKIELKQGFKSRIEDVREEIL 116
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012567.5E-8137IPR005541KNOX2
PfamPF037912.9E-10236IPR005541KNOX2
PROSITE profilePS512139.13295115IPR005539ELK domain
PROSITE profilePS5007111.71115178IPR001356Homeobox domain
SMARTSM003892.6E-10117182IPR001356Homeobox domain
SuperFamilySSF466891.84E-16117182IPR009057Homeodomain-like
CDDcd000863.00E-11118179No hitNo description
Gene3DG3DSA:1.10.10.601.3E-25122181IPR009057Homeodomain-like
PfamPF059206.1E-18135174IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLLCSFREQL QQHVRVHAVE AVMACREIEQ SLQDLTGVTL EEGTGATMSE EDEDEAPMLE  60
VGLVDMGSDG HDMMGFGPLL PTDSERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR  120
AGKLPGDTTS ILKQWWQQHS KWPYPTEDDK ARLVEETGLQ LKQINNWFIN QRKRNWHNNS  180
QTSTLKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13118174864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171190RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1239290.0leaf| pedicel| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060507
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060507_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284960.0KJ728496.1 Zea mays clone pUT6801 HB transcription factor (HB20) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660553.21e-140uncharacterized protein LOC100284833 isoform X1
SwissprotQ94LW31e-130KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1D6PKW21e-138A0A1D6PKW2_MAIZE; Putative knotted-like transcription factor family protein
TrEMBLK7WHE31e-138K7WHE3_MAIZE; HB transcription factor (Fragment)
STRINGGRMZM2G060507_P011e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-112KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]