PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G060541_P01

Common Name

ZEAMMB73_561359, Zm.43290

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

HB-other

Protein Properties

Length: 240aa MW: 25865.8 Da PI: 9.2616

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G060541_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	49	103	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k GRMZM2G060541_P01 49 KRVMKTPYQLEVLEYTYAVEHYPSEAKRLELSAKIGLSDRQLQMWFCHRRLKDRK 103 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-17	32	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-17	33	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.791	44	104	IPR001356	Homeobox domain
SMART	SM00389	3.0E-15	46	108	IPR001356	Homeobox domain
CDD	cd00086	3.06E-16	49	104	No hit	No description
Pfam	PF00046	2.6E-16	49	103	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDAGRDGDGA GKAPPKGPAD ATTVPPAPVA ASAPGSSAGT SGSGEKPVKR VMKTPYQLEV 60 LEYTYAVEHY PSEAKRLELS AKIGLSDRQL QMWFCHRRLK DRKPPSKRQR RDEESALAPV 120 MPPPPVLPAP VMPVASSDLM VGAPGPYDKL LQPVHLRRGA GRSSAVPRIS MPDLGRRYYE 180 PPPVMITPLM QLTQYELRVI NSVESQLGEP LREDGPALGI NFDPLPPGAF GAPIGMHIEI

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G060541

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G060541_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008656732.1	1e-156	homeobox-DDT domain protein RLT2 isoform X2
Refseq	XP_020397999.1	1e-156	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A1D6G163	1e-157	A0A1D6G163_MAIZE; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1D6G165	1e-157	A0A1D6G165_MAIZE; Homeobox-DDT domain protein RLT1
STRING	GRMZM2G060541_P01	1e-171	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16740	7	9
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	8e-39	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	GRMZM2G060541_P01