PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G061101_P02
Common NameLOC100193050
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 207aa    MW: 23395.1 Da    PI: 7.7448
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G061101_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-091241572255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  GRMZM2G061101_P02 124 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 157
                        69*****************************885 PP
2ELK38.23e-137798122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK++Ll+KYsgyL+sL+ E+s
  GRMZM2G061101_P02 77 ELKNHLLNKYSGYLSSLWRELS 98
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012567.2E-13138IPR005541KNOX2
PfamPF037911.0E-14136IPR005541KNOX2
PfamPF037898.6E-117798IPR005539ELK domain
PROSITE profilePS5121310.587797IPR005539ELK domain
SMARTSM011882.8E-77798IPR005539ELK domain
PROSITE profilePS5007112.47197160IPR001356Homeobox domain
SMARTSM003892.4E-1199164IPR001356Homeobox domain
SuperFamilySSF466891.54E-1899166IPR009057Homeodomain-like
CDDcd000861.22E-12100160No hitNo description
Gene3DG3DSA:1.10.10.608.4E-26102161IPR009057Homeodomain-like
PfamPF059203.5E-16117156IPR008422Homeobox KN domain
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEIYCHMLVR YRQELTRPIQ EADEFFKSME AQIDSFSLDD NGYEEGGGSS DEDEQETVDL  60
GGLPVPETGS PSGEGKELKN HLLNKYSGYL SSLWRELSRK KKKGKLPRDA RQKLLHWWQL  120
HYRWPYPSEL EKAALAESTG LDAKQINNWF INQRKRHWKP APPTMALGTP DYRMGQHGGG  180
ASSSSASAGL RVQGQYFTGG SSYPRGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.65850.0endosperm| glume| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G061101
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G061101_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352050.0BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406220.0BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131690.11e-153uncharacterized protein LOC100193050 isoform 1
RefseqNP_001336606.11e-153uncharacterized protein LOC100193050 isoform 2
SwissprotQ75LX78e-97KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLB4FDL71e-151B4FDL7_MAIZE; HB transcription factor
TrEMBLB4FU341e-151B4FU34_MAIZE; Uncharacterized protein
STRINGGRMZM2G061101_P011e-152(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-56KNOTTED-like from Arabidopsis thaliana