PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G062009_P02
Common NameLOC100217205, ZEAMMB73_934201
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 182aa    MW: 19003.9 Da    PI: 5.5236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G062009_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.17.9e-11127102128
                NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                        ++ktLvfy+grap+g+k+ Wvmhe+rl
  GRMZM2G062009_P02   1 MRKTLVFYRGRAPNGVKSGWVMHEFRL 27 
                        89***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-16146IPR003441NAC domain
PROSITE profilePS5100521.847146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRKTLVFYRG RAPNGVKSGW VMHEFRLDTP HSPPREDWVL CRVFQKTKAA DGDGDGGAQD  60
GDSSSPPAAF TGPSRPRAVS EPPDHSAPPA GGGYYYGLAF GPRQVEVAQQ QCYGGGGATV  120
ADHHHGFTRD SGGAAGFGAT WGGGVAGGEC GAGYLDMDGA FDVMMAGCFG GGDMDEFPQV  180
WR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G062009
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G062009_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381220.0BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001137035.11e-130uncharacterized protein LOC100217205
TrEMBLB4FLY41e-128B4FLY4_MAIZE; NAC domain containing protein 74
TrEMBLK4JRT91e-128K4JRT9_MAIZE; NAC-type transcription factor (Fragment)
STRINGGRMZM2G062009_P011e-129(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.18e-22NAC domain containing protein 74