PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G063203_P02
Common NameZEAMMB73_888358, Zm.84424
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 589aa    MW: 63621.1 Da    PI: 8.7826
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G063203_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2995179187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+++e+laLi++r+em+ ++r++ lk+plWe v++k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++s  +++f+qlea
  GRMZM2G063203_P02  95 RWPREETLALIRIRTEMDADFRSSPLKAPLWENVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKS--YRFFSQLEA 179
                        8*********************************************************************866665..*******85 PP
2trihelix1071.2e-33408493187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k+ev aLi++r+e++e++ ++ +k+plWe+++++mr  g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  GRMZM2G063203_P02 408 RWPKEEVEALIQMRNEKGEKYHDAGAKGPLWEDIAAAMRGIGYSRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 493
                        8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.03988152IPR017877Myb-like domain
SMARTSM007173.2E-492154IPR001005SANT/Myb domain
PfamPF138372.8E-2094180No hitNo description
CDDcd122031.58E-2694159No hitNo description
SMARTSM007178.0E-8405467IPR001005SANT/Myb domain
SuperFamilySSF466892.65E-6407480IPR009057Homeodomain-like
CDDcd122031.03E-23407472No hitNo description
Gene3DG3DSA:1.10.10.606.7E-6407464IPR009057Homeodomain-like
PROSITE profilePS500908.409407465IPR017877Myb-like domain
PfamPF138371.7E-22408494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MLHHHGGAGS PYMAPETAGT GTGTAPFSPT PTGLAVSVTA AIPALPTMQL QPAGSSANFE  60
ELAAGGSGAG VAVRLQDEDM QADLGASGAG ASGNRWPREE TLALIRIRTE MDADFRSSPL  120
KAPLWENVAR KLAGLGYHRS AKKCKEKFEN VDKYYRRTKD ARAGRQDGKS YRFFSQLEAL  180
HASAPPLPPP PSGMTTVQAG PHQPMEMAWT AGPTVLGPAA VAGLPDLSFS SMSESDSEYD  240
SDDDDDDSGA GEEGLSGGEC DREMMATFER MMKQFTEKQD AMQRVFLETL ERCEAERTAR  300
EEAWRRQEVA RMNREREQLA RERAAAASRD AALIAFLQRV GGGQGEPARL PPHGAGVVPP  360
PPMPDCAPPS PRRHAAAASL QQLVPVPPKA VEALARAGGE GGGSTPSRWP KEEVEALIQM  420
RNEKGEKYHD AGAKGPLWED IAAAMRGIGY SRSAKRCKEK WENINKYYKK VKESNKRRPE  480
DSKTCPYFHQ LDAMYRNKHR SGTGGRTAPR TNMASAVAVA ATVQDNPSKR ELEGKSSNDA  540
DNRKNDEQGN VLTSPASGDT APGGAAKNKC GRDRQRRRHG HGKKLHSLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1572577DRQRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.320070.0ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G063203
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G063203_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280320.0KJ728032.1 Zea mays clone pUT6172 trihelix transcription factor (THX16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310892.10.0trihelix transcription factor GTL1
RefseqXP_008678887.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A3L6EZL50.0A0A3L6EZL5_MAIZE; Trihelix transcription factor GT-2
TrEMBLK7TYX10.0K7TYX1_MAIZE; Putative homeodomain-like transcription factor superfamily protein isoform 1
STRINGGRMZM2G063203_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-42Trihelix family protein