PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G063216_P03
Common Nameumc2384, ZEAMMB73_243917
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 89aa    MW: 10043.3 Da    PI: 9.899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G063216_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.23.8e-094465223
                       --SS-EEEEEEE--TT-SS-EE CS
               WRKY  2 dDgynWrKYGqKevkgsefprs 23
                       dDg++WrKYG K+  +s+fpr 
  GRMZM2G063216_P03 44 DDGHQWRKYGEKKLSNSHFPRC 65
                       8*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-93169IPR003657WRKY domain
SuperFamilySSF1182904.18E-93670IPR003657WRKY domain
PROSITE profilePS5081110.983889IPR003657WRKY domain
SMARTSM007740.00254384IPR003657WRKY domain
PfamPF031068.8E-74466IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MALDSVPPYP SDLGSSRAAA AARTQQRIRK EERTWTSDTY APYDDGHQWR KYGEKKLSNS  60
HFPRCIKLCD RLLLTLSGGV VRGQVSLHP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.136031e-104cell culture| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G063216
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G063216_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0347841e-102BT034784.1 Zea mays full-length cDNA clone ZM_BFb0017P16 mRNA, complete cds.
GenBankEU9539001e-102EU953900.1 Zea mays clone 1448775 WRKY46 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131395.16e-34uncharacterized protein LOC100192722
TrEMBLB6SUJ13e-35B6SUJ1_MAIZE; WRKY46-superfamily of TFs having WRKY and zinc finger domains
STRINGGRMZM2G063216_P012e-33(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.15e-07WRKY DNA-binding protein 3