PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G064197_P02

Common Name

LOC100282824

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

G2-like

Protein Properties

Length: 111aa MW: 11982.8 Da PI: 10.6477

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G064197_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	3.9e-34	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl GRMZM2G064197_P02 37 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-32	34	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.738	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-17	36	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-25	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-9	39	90	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MFPPGLIHHR PDATAPGDGP PRSGPGGPSL VLTADPKPRL RWTADLHERF VDAVAQLGGP 60 EKATPKTILR TMGVKGLTLF HLKSHLQKYR LGKQSDKEGS EQSKDGKLLS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-21	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.117878	1e-179	ear\| embryo\| endosperm\| glume\| meristem\| root\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G064197

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G064197_P02

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037347	1e-177	BT037347.1 Zea mays full-length cDNA clone ZM_BFb0165E16 mRNA, complete cds.
GenBank	EU962431	1e-177	EU962431.1 Zea mays clone 242603 myb family transcription factor-related protein mRNA, complete cds.
GenBank	KJ726856	1e-177	KJ726856.1 Zea mays clone pUT3396 G2-like transcription factor (GLK1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020403322.1	3e-67	myb family transcription factor-related protein isoform X1
Swissprot	Q94A57	5e-42	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1D6I1M2	1e-73	A0A1D6I1M2_MAIZE; Protein PHR1-LIKE 3
STRING	Si030441m	3e-59	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.2	8e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G064197_P02

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]