PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G064426_P01
Common Namecaat1, ZEAMMB73_204841
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 178aa    MW: 18808.9 Da    PI: 7.5017
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G064426_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.29.1e-5731124194
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre
  GRMZM2G064426_P01  31 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYRE 122
                        69*****************************************************************************************9 PP

              NF-YB  93 le 94 
                         +
  GRMZM2G064426_P01 123 GD 124
                        65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.7E-5429133IPR009072Histone-fold
SuperFamilySSF471131.71E-3934131IPR009072Histone-fold
PfamPF008082.3E-2837101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-226583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-2284102No hitNo description
PRINTSPR006151.2E-22103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MADAPASPGG GGGSHESGSP RGGGGGGGGS VREQDRFLPI ANISRIMKKA IPANGKIAKD  60
AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI EPLKVYLQKY  120
REGDSKLTSK SSDGSIKKDA LGHVGASSSA VQGMGQQGTY NQGMGYMQPQ YHNGDISN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-5030122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-5030122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11629SGSPRGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.950050.0cell lignification| ear| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G064426
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G064426_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0410970.0BT041097.1 Zea mays full-length cDNA clone ZM_BFc0174L17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141333.11e-110CAAT box binding protein 1
RefseqXP_008654576.11e-110CAAT box binding protein 1 isoform X1
SwissprotP252091e-104NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A1D6FS521e-121A0A1D6FS52_MAIZE; Nuclear transcription factor Y subunit B-8
STRINGGRMZM2G064426_P021e-109(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.79e-67nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]