PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G064541_P01
Common NameNAC66, Zm.20553
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 517aa    MW: 57502.1 Da    PI: 5.5862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G064541_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.2e-4991361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGf FhP+d elv++yLk+k+ g+k+e  + i+evdiyk+ePwdLp+  ++  ++++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd+
  GRMZM2G064541_P01   9 LPPGFGFHPSDIELVSHYLKRKILGQKIEY-DLIPEVDIYKHEPWDLPAkcNLPIKDNKWHFFASRDRKYPTGSRSNRATLAGYWKSTGKDR 99 
                        79***************************9.99***************6244555999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  ++ + g+kktLvf++gr p+g++t+W+mhey +
  GRMZM2G064541_P01 100 AIKL-NKLTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                        ****.9999***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-574159IPR003441NAC domain
PROSITE profilePS5100554.6879159IPR003441NAC domain
PfamPF023659.1E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEVLRDMHLP PGFGFHPSDI ELVSHYLKRK ILGQKIEYDL IPEVDIYKHE PWDLPAKCNL  60
PIKDNKWHFF ASRDRKYPTG SRSNRATLAG YWKSTGKDRA IKLNKLTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDENG CKVSPDMKDA FVLCRVTKRN DWSLDNDNEV GNRSSHLEQP  180
DAATSVVSTV KPEDVAASVI CPEESNHATT PIGSAELSND VAQAAITPAA ITPDSTTPNG  240
GNELETWLQE LLDPSPPFNL VADTGSADVC PTEQYAESSN LQNPGSMAPN IRPGHASPIQ  300
DGTDATDYLF TDDLPEDLYS MLYPGTDQFN DSIFLEQTGQ EGNNNQTNYM MGIGSYVLPN  360
NFENETPNAE LQLDHENNKM DMSNENNDTG ITIRRRRATA PPANISLAAG KIKMQVGIKR  420
MVTSNSESIN QTMKFTDNSG RRLDLRTDVE HQKKNANNVI SAKQSDAANH EAHSNQGYLE  480
GFKRCSSAGF RAYIFVALFV VGVAALVLHY HRSNANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-45616312173Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.205530.0cell culture| embryo| endosperm| meristem| root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G064541
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G064541_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269860.0KJ726986.1 Zea mays clone pUT3687 NAC transcription factor (NAC66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673881.10.0NAC domain-containing protein 74
SwissprotQ7GCL71e-161NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A060CZ480.0A0A060CZ48_MAIZE; NAC domain-containing protein 89 (Fragment)
STRINGGRMZM2G064541_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Representative plantOGRP1283345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-59NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]