PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065496_P02
Common NameLOC100193780
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 273aa    MW: 30493 Da    PI: 6.184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065496_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.4e-17391171497
                        T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +r+++p kfa++++g+   + +  l+++s+ ++W v +  +k++++ +l +GW++F+ka++L+e+D ++F  +g+s+f   v vf
  GRMZM2G065496_P02  39 HRISVPEKFAKNFKGQI--TEEFHLKSPSSaETWHVGV--EKHGDKLFLVSGWENFAKAHELEENDLLLFACSGNSSF--EVLVF 117
                        789*******9998884..4579999*7776*******..********************************999999..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2022122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.25326120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-2028122IPR015300DNA-binding pseudobarrel domain
CDDcd100176.87E-1728117No hitNo description
SMARTSM010192.9E-1129120IPR003340B3 DNA binding domain
PfamPF023627.0E-1439116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVGAKGCERC RDWQEHYYWE HMDASKIRFF RCMTGDFAHR ISVPEKFAKN FKGQITEEFH  60
LKSPSSAETW HVGVEKHGDK LFLVSGWENF AKAHELEEND LLLFACSGNS SFEVLVFGAS  120
GCEKVSSLFG SGLGPDMGKQ FNDVVRRHGV HHSVTVSDSE DTVAPSQLVR SPRNALPLKE  180
PSGKARPSKY ESPNSSNFIV RHVATGKEGT DDEYANSNYY YSLSANRLGD EEKEEIIGLA  240
PHPTEQSCIC DPSEEKPCSA QKQLSDHPKQ VCC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.344000.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065496
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065496_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0361380.0BT036138.1 Zea mays full-length cDNA clone ZM_BFb0097O01 mRNA, complete cds.
GenBankBT0699380.0BT069938.1 Zea mays full-length cDNA clone ZM_BFb0325C21 mRNA, complete cds.
GenBankEU9596940.0EU959694.1 Zea mays clone 219410 B3 DNA binding domain containing protein mRNA, complete cds.
GenBankEU9654370.0EU965437.1 Zea mays clone 286030 B3 DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132338.11e-179uncharacterized protein LOC100193780
SwissprotQ2QMT28e-69Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLB4FGA01e-178B4FGA0_MAIZE; B3 domain-containing protein
STRINGGRMZM2G065496_P041e-179(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-23B3 family protein