PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065829_P02
Common NameZEAMMB73_484571, Zm.21577
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 217aa    MW: 23294.5 Da    PI: 9.7634
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065829_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-14136180347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W++eE+ +++ +  +lG+g+W+ Iar    +Rt+ q+ s+ qk+
  GRMZM2G065829_P02 136 PWSEEEHRQFLAGLDKLGKGDWRGIARSYVPTRTPTQVASHAQKF 180
                        8**************************9998************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.46129185IPR017930Myb domain
SuperFamilySSF466893.04E-17130186IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-17132184IPR006447Myb domain, plants
SMARTSM007175.1E-10133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-11133176IPR009057Homeodomain-like
PfamPF002496.4E-11136179IPR001005SANT/Myb domain
CDDcd001673.33E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCGL GLGLGHREIM LCEGGDDNNG RSGLRLFGVQ VRIGGGGGAG  60
SASMKKSYSM DCLQLAAPHA CSSLVSSPSS SSLCSSSSPS SLLLSIDDGL QRGAADGYLS  120
DGPHGRAVQE RKKGVPWSEE EHRQFLAGLD KLGKGDWRGI ARSYVPTRTP TQVASHAQKF  180
FLRQSSMGKK KRRSSLFDMV CACRHQHLSL FFLYVIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.215770.0endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065829
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065829_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368510.0BT036851.1 Zea mays full-length cDNA clone ZM_BFb0143J15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397505.11e-142putative MYB DNA-binding domain superfamily protein isoform X3
TrEMBLA0A3L6DRI31e-143A0A3L6DRI3_MAIZE; Transcription factor MYBS3
STRINGGRMZM2G065829_P031e-143(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-42MYB_related family protein