PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G067463_P01
Common NameLOC103645821
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 177aa    MW: 19080 Da    PI: 5.3498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G067463_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-18653253
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                       +++GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ +
  GRMZM2G067463_P01  6 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLI 53
                       69******9.**********8.....334*********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.30E-29563No hitNo description
PROSITE profilePS5103220.89663IPR001471AP2/ERF domain
PfamPF008478.8E-11651IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-20664IPR016177DNA-binding domain
SMARTSM003805.7E-36669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32663IPR001471AP2/ERF domain
PRINTSPR003672.0E-10718IPR001471AP2/ERF domain
PRINTSPR003672.0E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MPKLQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTYETAE DAARAYDEAA RLISGPAART  60
NFPLTGGGGG GTLSPTLRAK LEKCCCTALA QEAQHGADVP RTGAGRGDDG SSRRDRRRDG  120
DEEDEEAGVK VEPDADADGE EYIEEMIREL TYYGPVEIQH HPSAAGGGGA CSSSAIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15369269ATERF1
3gcc_A3e-15369269ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.320924e-44endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G067463
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G067463_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083551e-44AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020403609.21e-126ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-43ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1D6DVL91e-102A0A1D6DVL9_MAIZE; Ethylene-responsive transcription factor ERF003
STRINGGRMZM2G067463_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-27ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]