PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G067702_P01
Common NameGLK56, LOC100280967, ZEAMMB73_414660, Zm.15210
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 219aa    MW: 23717.8 Da    PI: 7.0878
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G067702_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like971.3e-30116169155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv++v++L G++kA+Pkti+elm+v+gLt+e+v+SHLQkYRl
  GRMZM2G067702_P01 116 RPRLVWTPQLHKRFVDVVAHL-GIKKAVPKTIMELMNVEGLTRENVASHLQKYRL 169
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.913113172IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-31114174IPR009057Homeodomain-like
SuperFamilySSF466891.97E-19115173IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-25117169IPR006447Myb domain, plants
PfamPF002493.3E-8119168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGEEAVDDYE LHMVCYGSDE DERVMEWESG LPGADELTPL SQPLVPPGLA AAFRIPPEPG  60
RTLLDLHRAS EATVARLRRA PPSSPGTSSS PHGHQEARGG EGADSAAATT TNSNRRPRLV  120
WTPQLHKRFV DVVAHLGIKK AVPKTIMELM NVEGLTRENV ASHLQKYRLY VKRMRGQGPS  180
PSDHIFAPTP VHGVAVGMVP MVSGQAYHYL YNGGGGGDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-33116172157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.152100.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G067702
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G067702_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280530.0KJ728053.1 Zea mays clone pUT6199 G2-like transcription factor (GLK56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654896.11e-160ARR1 protein-like isoform X1
SwissprotQ94DH34e-80PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A3L6DQG01e-159A0A3L6DQG0_MAIZE; Transcription factor PCL1
TrEMBLK7V8Y41e-159K7V8Y4_MAIZE; G2-like transcription factor
STRINGGRMZM2G067702_P011e-160(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.37e-62G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]