PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069009_P02
Common NameLOC100281498
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 220aa    MW: 23364.1 Da    PI: 8.4424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069009_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.22.8e-135985127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +++++C ++++tGtCkyG+ Ck++H++
  GRMZM2G069009_P02 59 PGQPECEHYMKTGTCKYGAACKYHHPQ 85
                       5789*********************97 PP
2zf-CCCH27.84.3e-09107131327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +C ++a  G+Ck+G++CkF H++
  GRMZM2G069009_P02 107 SQPCAYYAHHGYCKFGPTCKFDHPM 131
                        679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-65885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8595886IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-116085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-66285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-46483IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624104132IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6106132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4108129IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNQVTPAGGQ QAVPVGASYG LSHQGPTSAM TYGSHYAQLY SSSGTSSSNI QEYAFPERPG  60
QPECEHYMKT GTCKYGAACK YHHPQYFSGP KSNCILSPLG LPLRPGSQPC AYYAHHGYCK  120
FGPTCKFDHP MGTPNYSIST SSLTDVPIAP YPQSFPVTPM PSYLPSSDLR PQYTQVKDSS  180
ANPPPSPGTT YGPVGSISKV YAPHTLIRSP ASAAAGMQAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.394840.0cell culture| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069009
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069009_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0637610.0BT063761.1 Zea mays full-length cDNA clone ZM_BFc0104J02 mRNA, complete cds.
GenBankBT0678680.0BT067868.1 Zea mays full-length cDNA clone ZM_BFc0176C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354949.11e-147uncharacterized protein LOC100281498
SwissprotQ5NAV38e-91C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A096QZU01e-156A0A096QZU0_MAIZE; Zinc finger CCCH domain-containing protein 58
STRINGGRMZM2G069009_P011e-147(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-37C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]