PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069365_P01
Common NameZEAMMB73_255028, Zm.33871
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 446aa    MW: 48227.8 Da    PI: 7.1435
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069365_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.38.6e-29172224357
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                        ++rY+eCl+NhAa+lG+h++DGC+Efmps g++  aaal CaACgCHR+FHRre 
  GRMZM2G069365_P01 172 QWRYRECLRNHAARLGAHVLDGCCEFMPS-GSD-GAAALACAACGCHRSFHRREA 224
                        689*************************9.555.589****************96 PP
2Homeobox15.23.8e-05329384152
                        TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                        +r Rt+ft+eq +++ e+ +    + ++p+a++     +++g++ r+ kvW +N +
  GRMZM2G069365_P01 329 KRFRTKFTAEQKDRMREFAHrvgwRIHKPDADAVDVFCAQVGVSRRVLKVWMHNNK 384
                        789***********987655888779****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.9E-26173224IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-23174223IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-10174223IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.941175223IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-29320387IPR009057Homeodomain-like
SuperFamilySSF466893.13E-19322385IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-27328384IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEYKRSSHVE DEDEDELEEE EEEDEEEEED EDEEARSHRY TTAAAAPLGT PQQQEVQAQA  60
LGLGSHASLM DSAAFSRPLL PPNSSLVTQP PLPPPGFLPA HRQPPQLHPR KAERERERDR  120
AAGAQQPQLR RHQEPVRNNN GVLGGGGGAA PPSAASSTFG LASVRPVVEA PQWRYRECLR  180
NHAARLGAHV LDGCCEFMPS GSDGAAALAC AACGCHRSFH RREAIPGGVA AAAAVVSPSA  240
VPVVTPTARA SANSSRVMPL LMAPPHMHTR PPHVPASPAS APAALTESSS EELRGHAPAH  300
PAAPPPPPPH AQVVALAGSA SAPPAPSKKR FRTKFTAEQK DRMREFAHRV GWRIHKPDAD  360
AVDVFCAQVG VSRRVLKVWM HNNKHLAKVP PSPPSSQAQA QAQPPPPPQQ HRHHNHHPPP  420
PPPHHIHHHH HPPPPPQQEQ QHDMHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-213273961679ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.338710.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069365
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069365_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9567590.0EU956759.1 Zea mays clone 1572892 zinc finger homeodomain protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147843.20.0zinc finger homeodomain protein 1
SwissprotQ8S3Q93e-87ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLK7U7M40.0K7U7M4_MAIZE; Putative homeobox DNA-binding domain superfamily protein
STRINGGRMZM2G069365_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-21homeobox protein 22