PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G071034_P02
Common Namepco086234b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 234aa    MW: 24270.3 Da    PI: 9.7183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G071034_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.4e-093358227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       kt+ C  +  t  Ck+Gd+C+FaH++
  GRMZM2G071034_P02 33 KTRMCTKYNTTEGCKFGDKCHFAHSE 58
                       89**********************95 PP
2zf-CCCH39.87.6e-13201226127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC +f++ G C +GdrC+FaHg+
  GRMZM2G071034_P02 201 YKTKLCENFLK-GACTFGDRCHFAHGE 226
                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-143063IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-93062IPR000571Zinc finger, CCCH-type
SMARTSM003560.0173158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5823159IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-53358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.102.1E-1498168IPR004088K Homology domain, type 1
SMARTSM003224.0E-1198168IPR004087K Homology domain
PROSITE profilePS5008414.69799163IPR004088K Homology domain, type 1
PfamPF000138.9E-11101164IPR004088K Homology domain, type 1
CDDcd001056.94E-14101163No hitNo description
SuperFamilySSF547914.29E-14101191IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.2E-15197230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-9199230IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-9200226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.553200227IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10201226IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLNLSSSAVS APSRTHVDHA ALTGASHPAS TVKTRMCTKY NTTEGCKFGD KCHFAHSERE  60
LAKPAYMSQE GPPMGGRYGR AEPMQPAAMG PPAGNFGASA TAKISVDASL AGGIIGKGGV  120
NTKQISRITG VKLSIRDHES NPNLKNIELE GNFDQIKQAS DLVRDLIATI SASMPAKNPS  180
AAAAPAGGGR GGGPGGKSSN YKTKLCENFL KGACTFGDRC HFAHGETEQR RGAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.944410.0cell culture| ear| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G071034
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G071034_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342970.0BT034297.1 Zea mays full-length cDNA clone ZM_BFc0007B18 mRNA, complete cds.
GenBankEU9642470.0EU964247.1 Zea mays clone 277297 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130916.11e-172uncharacterized protein LOC100192020
SwissprotQ7XPK11e-100C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A1D6DUM91e-172A0A1D6DUM9_MAIZE; Zinc finger CCCH domain-containing protein 52
STRINGGRMZM2G071034_P011e-171(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-54C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]