PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G071468_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 112aa    MW: 13387.5 Da    PI: 10.3018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G071468_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09648145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       rg+W++ + e ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  GRMZM2G071468_P02  6 RGKWSKSDTEFFYEGLRQFGSD-FAMIQQLFP-DKTRHQVRQKFK 48
                       89********************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.2E-25280No hitNo description
SMARTSM007174.3E-8553IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5649IPR009057Homeodomain-like
SuperFamilySSF466894.49E-11756IPR009057Homeodomain-like
CDDcd001676.33E-6848No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MNKPARGKWS KSDTEFFYEG LRQFGSDFAM IQQLFPDKTR HQVRQKFKSE ERKNPLLVHD  60
AIVHRSGDSL YFKKVIKQLN IEDVVLPDIK STQNKMVHQV KEALEMRMYW MI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.388631e-104cell culture| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G071468
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G071468_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794591e-106HF679459.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB53 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646030.24e-56transcription factor TFIIIB component B'' homolog isoform X4
RefseqXP_020394222.12e-56transcription factor TFIIIB component B'' homolog isoform X6
RefseqXP_023155785.14e-56transcription factor TFIIIB component B'' homolog isoform X4
RefseqXP_023155786.14e-56transcription factor TFIIIB component B'' homolog isoform X4
RefseqXP_023155789.13e-56transcription factor TFIIIB component B'' homolog isoform X5
RefseqXP_023155791.12e-56transcription factor TFIIIB component B'' homolog isoform X6
RefseqXP_023155792.12e-56transcription factor TFIIIB component B'' homolog isoform X6
TrEMBLA0A1D6HF917e-57A0A1D6HF91_MAIZE; Homeodomain-like superfamily protein
STRINGSb07g001792.18e-56(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.19e-28MYB_related family protein