PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G072820_P01
Common NameLOC103645865, Zm.7865
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 104aa    MW: 11120.3 Da    PI: 8.5371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G072820_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-0629711454
                       HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
                       d+i + +++L+ llP++   ++++ + s a +L+ ++ YI+sL
  GRMZM2G072820_P01 29 DQISELLSKLQALLPESQarNGGAHRGSAARVLQDTCSYIRSL 71
                       6899************6667888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3751571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-82989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-92975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSSGRRSSRT RRAGSSSLSS STSRSISEDQ ISELLSKLQA LLPESQARNG GAHRGSAARV  60
LQDTCSYIRS LHQEVDNLSE TLAELLASAD VTSDQAAVIR SLLM
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO169271451e-110
Expression AtlasGRMZM2G072820-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths, lamina joint, stems and panicles. Expressed at low levels in roots. {ECO:0000269|PubMed:20009022}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G072820_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9513113e-59JQ951311.1 Zea mays isolate tac907.62 chromosome 2 insertion sequence Ac, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668794.11e-65transcription factor ILI1
SwissprotA2XY477e-44ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7427e-44ILI1_ORYSJ; Transcription factor ILI1
TrEMBLA0A1D6DWS93e-64A0A1D6DWS9_MAIZE; Transcription factor PRE3
STRINGGRMZM2G072820_P014e-65(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Representative plantOGRP8216416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-17bHLH family protein