PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G073982_P01
Common NameLOC103638091, ZEAMMB73_364302
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 491aa    MW: 51510.1 Da    PI: 7.3769
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G073982_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.6e-14104163155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  GRMZM2G073982_P01 104 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 163
                        789******************888855566447**********99*************98 PP
2AP251.91.8e-16206257155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  GRMZM2G073982_P01 206 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 257
                        89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-11104163IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15104172IPR016177DNA-binding domain
SMARTSM003806.3E-24105177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-14105171IPR001471AP2/ERF domain
PROSITE profilePS5103219.177105171IPR001471AP2/ERF domain
PRINTSPR003674.1E-5106117IPR001471AP2/ERF domain
CDDcd000181.30E-23206267No hitNo description
PfamPF008476.7E-12206257IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18206267IPR016177DNA-binding domain
SMARTSM003802.7E-26207271IPR001471AP2/ERF domain
PROSITE profilePS5103218.953207265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-18207266IPR001471AP2/ERF domain
PRINTSPR003674.1E-5247267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
METYGHGLVK DELHSGGGCG GGGIGGQGLY CGATATTPRA AAPAAATTGS GGGVVKSVRR  60
RKRAPPPPSS LVVATAMSGC KDEAAGGDKS ASSNSSNNAS KRSSRFRGVS RHRWTGRFEA  120
HLWDKGTWNP TQKKKGKQVY LGAYNEEDAA ARAYDLAALK YWGPTTYTNF PVVDYEKELK  180
VMQNVSKEEY LACIRRKSNG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYST  240
QEEAARAYDI AAIEYRGINA VTNFDLSTYI RWLKPPGAED GGTTATTSSG IAAAMPPPPS  300
SLCIQAGGLL QHPHGAAAAA AAMLHDVDDD LYRGRHALFS AGGSLDDVGS SSVYAAGTGP  360
GPTAAALCVG GRPSPTSSST ALSLLLRSSV FQELVARNGG APQQQQQLVP ADDDGAVSLS  420
PGVVVDAKVE QHEEAEGDLG HGGQLYGGAA GADEEDAFAC SMYELDDSFA RIEHSLWGCL  480
RSSDGSDALN L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15561KSVRRRK
2129137PTQKKKGKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G073982
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G073982_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9486480.0EU948648.1 Zea mays clone 381378 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400136.10.0uncharacterized protein LOC103638091
TrEMBLK7VET60.0K7VET6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G073982_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-78AP2 family protein